J4_5AFI_010
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AFI_010 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.0878
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5AFI|1|A|G|2643||||P_1
5AFI|1|A|G|2644||||P_1
5AFI|1|A|G|2645||||P_1
5AFI|1|A|C|2646||||P_1
*
5AFI|1|A|G|2674||||P_1
5AFI|1|A|A|2675||||P_1
5AFI|1|A|C|2676||||P_1
*
5AFI|1|A|G|2731||||P_1
5AFI|1|A|G|2732||||P_1
5AFI|1|A|A|2733||||P_1
5AFI|1|A|A|2734||||P_1
5AFI|1|A|G|2735||||P_1
*
5AFI|1|A|U|2769||||P_1
5AFI|1|A|G|2770||||P_1
5AFI|1|A|C|2771||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain K
- 50S ribosomal protein L14
Coloring options: