J4_5AFI_011
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAGUAAUG*UG*CUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 5AFI|1|a|U|121||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AFI_011 not in the Motif Atlas
- Homologous match to J4_5J7L_001
- Geometric discrepancy: 0.2943
- The information below is about J4_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.3
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5AFI|1|a|G|115||||P_1
5AFI|1|a|A|116||||P_1
5AFI|1|a|G|117||||P_1
5AFI|1|a|U|118||||P_1
5AFI|1|a|A|119||||P_1
5AFI|1|a|A|120||||P_1
5AFI|1|a|U|121||||P_1
5AFI|1|a|G|122||||P_1
*
5AFI|1|a|U|239||||P_1
5AFI|1|a|G|240||||P_1
*
5AFI|1|a|C|286||||P_1
5AFI|1|a|U|287||||P_1
5AFI|1|a|A|288||||P_1
5AFI|1|a|G|289||||P_1
*
5AFI|1|a|C|311||||P_1
5AFI|1|a|C|312||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain p
- 30S ribosomal protein S16
- Chain q
- 30S ribosomal protein S17
Coloring options: