J4_5AFI_012
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 5AFI|1|a|C|183||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AFI_012 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.1765
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5AFI|1|a|G|142||||P_1
5AFI|1|a|A|143||||P_1
5AFI|1|a|G|144||||P_1
*
5AFI|1|a|C|178||||P_1
5AFI|1|a|A|179||||P_1
5AFI|1|a|U|180||||P_1
5AFI|1|a|A|181||||P_1
5AFI|1|a|A|182||||P_1
5AFI|1|a|C|183||||P_1
5AFI|1|a|G|184||||P_1
*
5AFI|1|a|C|193||||P_1
5AFI|1|a|C|194||||P_1
5AFI|1|a|A|195||||P_1
5AFI|1|a|A|196||||P_1
5AFI|1|a|A|197||||P_1
5AFI|1|a|G|198||||P_1
*
5AFI|1|a|U|219||||P_1
5AFI|1|a|G|220||||P_1
5AFI|1|a|C|221||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain t
- 30S ribosomal protein S20
Coloring options: