J4_5AJ0_002

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

5AJ0|1|A2|A|2345, 5AJ0|1|A2|U|2348, 5AJ0|1|A2|U|2805, 5AJ0|1|A2|U|2807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|A2|C|2344
5AJ0|1|A2|A|2345
5AJ0|1|A2|A|2346
5AJ0|1|A2|A|2347
5AJ0|1|A2|U|2348
5AJ0|1|A2|A|2349
5AJ0|1|A2|U|2350
*
5AJ0|1|A2|A|2368
5AJ0|1|A2|G|2369
5AJ0|1|A2|G|2370
*
5AJ0|1|A2|C|2803
5AJ0|1|A2|A|2804
5AJ0|1|A2|U|2805
5AJ0|1|A2|G|2806
5AJ0|1|A2|U|2807
5AJ0|1|A2|U|2808
*
5AJ0|1|A2|A|3827
5AJ0|1|A2|G|3828

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AP

60S ribosomal protein L17

Chain AR

60S ribosomal protein L19

Chain Ad

60S ribosomal protein L31