J4_5AJ0_004
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UC*GGUCAG*UC*GGCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 5AJ0|1|A2|C|2416
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AJ0_004 not in the Motif Atlas
- Homologous match to J4_8GLP_006
- Geometric discrepancy: 0.0903
- The information below is about J4_8GLP_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.2
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
5AJ0|1|A2|U|2388
5AJ0|1|A2|C|2389
*
5AJ0|1|A2|G|2413
5AJ0|1|A2|G|2414
5AJ0|1|A2|U|2415
5AJ0|1|A2|C|2416
5AJ0|1|A2|A|2417
5AJ0|1|A2|G|2418
*
5AJ0|1|A2|U|2517
5AJ0|1|A2|C|2518
*
5AJ0|1|A2|G|2756
5AJ0|1|A2|G|2757
5AJ0|1|A2|C|2758
5AJ0|1|A2|C|2759
5AJ0|1|A2|G|2760
5AJ0|1|A2|U|2761
5AJ0|1|A2|A|2762
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AR
- 60S ribosomal protein L19
- Chain AX
- 60S ribosomal protein L23a
- Chain Ag
- 60S ribosomal protein L34
- Chain Ah
- 60S ribosomal protein L35
- Chain Ak
- 60S ribosomal protein L38
- Chain Al
- 60S ribosomal protein L39
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