J4_5AJ0_007

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUG*CGG*CUUAAGGUAG*UGAAUG

Length

22 nucleotides

Bulged bases

5AJ0|1|A2|U|3789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|A2|C|3667
5AJ0|1|A2|U|3668
5AJ0|1|A2|G|3669
*
5AJ0|1|A2|C|3723
5AJ0|1|A2|G|3724
5AJ0|1|A2|G|3725
*
5AJ0|1|A2|C|3742
5AJ0|1|A2|U|3743
5AJ0|1|A2|U|3744
5AJ0|1|A2|A|3745
5AJ0|1|A2|A|3746
5AJ0|1|A2|G|3747
5AJ0|1|A2|G|3748
5AJ0|1|A2|U|3749
5AJ0|1|A2|A|3750
5AJ0|1|A2|G|3751
*
5AJ0|1|A2|U|3785
5AJ0|1|A2|G|3786
5AJ0|1|A2|A|3787
5AJ0|1|A2|A|3788
5AJ0|1|A2|U|3789
5AJ0|1|A2|G|3790

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain An

60S ribosomal protein L41

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain Bv

Transfer RNA; tRNA