J4_5AJ0_008
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 5AJ0|1|A2|A|4196
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AJ0_008 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1604
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AJ0|1|A2|C|4193
5AJ0|1|A2|U|4194
5AJ0|1|A2|A|4195
5AJ0|1|A2|A|4196
5AJ0|1|A2|G|4197
*
5AJ0|1|A2|U|4251
5AJ0|1|A2|U|4252
5AJ0|1|A2|G|4253
5AJ0|1|A2|A|4254
5AJ0|1|A2|U|4255
*
5AJ0|1|A2|A|4279
5AJ0|1|A2|C|4280
5AJ0|1|A2|C|4281
*
5AJ0|1|A2|G|4290
5AJ0|1|A2|G|4291
5AJ0|1|A2|G|4292
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein L5
- Chain AT
- 60S ribosomal protein L21
- Chain Ab
- 60S ribosomal protein L29
- Chain Ao
- 60S ribosomal protein L36a
Coloring options: