3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GUAA*UC*GUG*CGCC
Length
13 nucleotides
Bulged bases
5AJ0|1|A2|A|4551
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5AJ0|1|A2|G|4549
5AJ0|1|A2|U|4550
5AJ0|1|A2|A|4551
5AJ0|1|A2|A|4552
*
5AJ0|1|A2|U|4582
5AJ0|1|A2|C|4583
*
5AJ0|1|A2|G|4638
5AJ0|1|A2|U|4639
5AJ0|1|A2|G|4640
*
5AJ0|1|A2|C|4674
5AJ0|1|A2|G|4675
5AJ0|1|A2|C|4676
5AJ0|1|A2|C|4677

Current chains

Chain A2
28S ribosomal RNA

Nearby chains

Chain AB
60S ribosomal protein L3
Chain AO
60S ribosomal protein L13a
Chain AV
60S ribosomal protein L23

Coloring options:

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