J4_5AJ0_012
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 5AJ0|1|Bv|U|8, 5AJ0|1|Bv|U|47, 5AJ0|1|Bv|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AJ0_012 not in the Motif Atlas
- Homologous match to J4_6UGG_002
- Geometric discrepancy: 0.2022
- The information below is about J4_6UGG_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5AJ0|1|Bv|A|7
5AJ0|1|Bv|U|8
5AJ0|1|Bv|A|9
5AJ0|1|Bv|G|10
*
5AJ0|1|Bv|C|25
5AJ0|1|Bv|A|26
5AJ0|1|Bv|G|27
*
5AJ0|1|Bv|C|43
5AJ0|1|Bv|G|44
5AJ0|1|Bv|U|45
5AJ0|1|Bv|G|46
5AJ0|1|Bv|U|47
5AJ0|1|Bv|C|48
5AJ0|1|Bv|C|49
*
5AJ0|1|Bv|G|65
5AJ0|1|Bv|U|66
Current chains
- Chain Bv
- tRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AI
- 60S ribosomal protein L10
- Chain B1
- Small subunit ribosomal RNA; SSU rRNA
- Chain BZ
- 40S ribosomal protein S25
Coloring options: