J4_5AJ0_014

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCUC*GCCGGG*CCACGCGCGC*GGCGGAGCGAG

Length

32 nucleotides

Bulged bases

5AJ0|1|A2|U|967, 5AJ0|1|A2|U|969, 5AJ0|1|A2|C|1220, 5AJ0|1|A2|G|1254, 5AJ0|1|A2|C|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|A2|C|966
5AJ0|1|A2|U|967
5AJ0|1|A2|C|968
5AJ0|1|A2|U|969
5AJ0|1|A2|C|970
*
5AJ0|1|A2|G|1053
5AJ0|1|A2|C|1054
5AJ0|1|A2|C|1055
5AJ0|1|A2|G|1056
5AJ0|1|A2|G|1057
5AJ0|1|A2|G|1058
*
5AJ0|1|A2|C|1219
5AJ0|1|A2|C|1220
5AJ0|1|A2|A|1221
5AJ0|1|A2|C|1222
5AJ0|1|A2|G|1223
5AJ0|1|A2|C|1224
5AJ0|1|A2|G|1225
5AJ0|1|A2|C|1226
5AJ0|1|A2|G|1227
5AJ0|1|A2|C|1228
*
5AJ0|1|A2|G|1248
5AJ0|1|A2|G|1249
5AJ0|1|A2|C|1250
5AJ0|1|A2|G|1251
5AJ0|1|A2|G|1252
5AJ0|1|A2|A|1253
5AJ0|1|A2|G|1254
5AJ0|1|A2|C|1255
5AJ0|1|A2|G|1256
5AJ0|1|A2|A|1257
5AJ0|1|A2|G|1258

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4

Chain AF

60S ribosomal protein L7