J4_5AKA_001

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CCAGA*UCGAUGAGUAG*UGAAUAUG*CAAG

Length

28 nucleotides

Bulged bases

5AKA|1|B|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AKA|1|B|C|268
5AKA|1|B|C|269
5AKA|1|B|A|270
5AKA|1|B|G|271
5AKA|1|B|A|272
*
5AKA|1|B|U|365
5AKA|1|B|C|366
5AKA|1|B|G|367
5AKA|1|B|A|368
5AKA|1|B|U|369
5AKA|1|B|G|370
5AKA|1|B|A|371
5AKA|1|B|G|372
5AKA|1|B|U|373
5AKA|1|B|A|374
5AKA|1|B|G|375
*
5AKA|1|B|U|399
5AKA|1|B|G|400
5AKA|1|B|A|401
5AKA|1|B|A|402
5AKA|1|B|U|403
5AKA|1|B|A|404
5AKA|1|B|U|405
5AKA|1|B|G|406
*
5AKA|1|B|C|421
5AKA|1|B|A|422
5AKA|1|B|A|423
5AKA|1|B|G|424

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L9

Chain Z

50S RIBOSOMAL PROTEIN L31