J4_5AKA_002

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

5AKA|1|B|U|653, 5AKA|1|B|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5AKA_002 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.3574

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

5AKA|1|B|C|601
5AKA|1|B|A|602
5AKA|1|B|A|603
5AKA|1|B|G|604
*
5AKA|1|B|C|624
5AKA|1|B|G|625
5AKA|1|B|A|626
5AKA|1|B|A|627
5AKA|1|B|G|628
*
5AKA|1|B|C|635
5AKA|1|B|G|636
5AKA|1|B|A|637
5AKA|1|B|G|638
*
5AKA|1|B|C|650
5AKA|1|B|G|651
5AKA|1|B|U|652
5AKA|1|B|U|653
5AKA|1|B|A|654
5AKA|1|B|A|655
5AKA|1|B|G|656

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L35

Chain E

50S RIBOSOMAL PROTEIN L4

Chain L

50S RIBOSOMAL PROTEIN L15