J4_5AKA_004

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5AKA|1|B|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5AKA_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0911

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5AKA|1|B|G|1310
5AKA|1|B|G|1311
5AKA|1|B|U|1312
5AKA|1|B|U|1313
5AKA|1|B|C|1314
*
5AKA|1|B|G|1338
5AKA|1|B|G|1339
5AKA|1|B|U|1340
5AKA|1|B|G|1341
5AKA|1|B|A|1342
5AKA|1|B|G|1343
*
5AKA|1|B|C|1404
5AKA|1|B|U|1405
*
5AKA|1|B|A|1597
5AKA|1|B|A|1598
5AKA|1|B|U|1599
5AKA|1|B|C|1600
5AKA|1|B|G|1601
5AKA|1|B|U|1602
5AKA|1|B|A|1603
5AKA|1|B|C|1604

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain T

50S RIBOSOMAL PROTEIN L23