J4_5AKA_006

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGUUGG*UUUAAGCGUGUAG*UGAGGCGUGAUGAC*GCAACA

Length

39 nucleotides

Bulged bases

5AKA|1|B|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AKA|1|B|U|1440
5AKA|1|B|G|1441
5AKA|1|B|U|1442
5AKA|1|B|U|1443
5AKA|1|B|G|1444
5AKA|1|B|G|1445
*
5AKA|1|B|U|1466
5AKA|1|B|U|1467
5AKA|1|B|U|1468
5AKA|1|B|A|1469
5AKA|1|B|A|1470
5AKA|1|B|G|1471
5AKA|1|B|C|1472
5AKA|1|B|G|1473
5AKA|1|B|U|1474
5AKA|1|B|G|1475
5AKA|1|B|U|1476
5AKA|1|B|A|1477
5AKA|1|B|G|1478
*
5AKA|1|B|U|1513
5AKA|1|B|G|1514
5AKA|1|B|A|1515
5AKA|1|B|G|1516
5AKA|1|B|G|1517
5AKA|1|B|C|1518
5AKA|1|B|G|1519
5AKA|1|B|U|1520
5AKA|1|B|G|1521
5AKA|1|B|A|1522
5AKA|1|B|U|1523
5AKA|1|B|G|1524
5AKA|1|B|A|1525
5AKA|1|B|C|1526
*
5AKA|1|B|G|1546
5AKA|1|B|C|1547
5AKA|1|B|A|1548
5AKA|1|B|A|1549
5AKA|1|B|C|1550
5AKA|1|B|A|1551

Current chains

Chain B

23S ribosomal RNA

Nearby chains