J4_5AKA_008

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5AKA|1|B|U|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5AKA_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1174

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5AKA|1|B|C|1833
5AKA|1|B|U|1834
5AKA|1|B|G|1835
*
5AKA|1|B|C|1905
5AKA|1|B|G|1906
*
5AKA|1|B|C|1924
5AKA|1|B|C|1925
5AKA|1|B|U|1926
5AKA|1|B|A|1927
5AKA|1|B|A|1928
5AKA|1|B|G|1929
5AKA|1|B|G|1930
5AKA|1|B|U|1931
5AKA|1|B|A|1932
5AKA|1|B|G|1933
*
5AKA|1|B|C|1967
5AKA|1|B|G|1968
5AKA|1|B|A|1969
5AKA|1|B|A|1970
5AKA|1|B|U|1971
5AKA|1|B|G|1972

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2