J4_5APN_008

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUGG

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5APN|1|5|C|2192
5APN|1|5|U|2193
5APN|1|5|G|2194
*
5APN|1|5|C|2248
5APN|1|5|G|2249
*
5APN|1|5|C|2267
5APN|1|5|U|2268
5APN|1|5|U|2269
5APN|1|5|A|2270
5APN|1|5|A|2271
5APN|1|5|G|2272
5APN|1|5|G|2273
5APN|1|5|U|2274
5APN|1|5|A|2275
5APN|1|5|G|2276
*
5APN|1|5|U|2310
5APN|1|5|G|2311
5APN|1|5|A|2312
5APN|1|5|A|2313
5APN|1|5|U|2314
5APN|1|5|G|2315
5APN|1|5|G|2316

Current chains

Chain 5

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L2-A