J4_5APO_001
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 5APO|1|5|U|298||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5APO_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.094
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5APO|1|5|U|112||||P_1
5APO|1|5|C|113||||P_1
*
5APO|1|5|G|267||||P_1
5APO|1|5|A|268||||P_1
5APO|1|5|G|269||||P_1
5APO|1|5|U|270||||P_1
5APO|1|5|C|271||||P_1
5APO|1|5|G|272||||P_1
*
5APO|1|5|C|293||||P_1
5APO|1|5|U|294||||P_1
5APO|1|5|A|295||||P_1
5APO|1|5|A|296||||P_1
5APO|1|5|G|297||||P_1
5APO|1|5|U|298||||P_1
5APO|1|5|G|299||||P_1
*
5APO|1|5|U|316||||P_1
5APO|1|5|A|317||||P_1
5APO|1|5|A|318||||P_1
5APO|1|5|A|319||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
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