J4_5D8B_013

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GCAAGUUGG*UG*CCGCAGUGAACAGG*CGC

Length

28 nucleotides

Bulged bases

5D8B|1|VC|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|VC|G|1674
5D8B|1|VC|C|1675
5D8B|1|VC|A|1676
5D8B|1|VC|A|1677
5D8B|1|VC|G|1678
5D8B|1|VC|U|1679
5D8B|1|VC|U|1680
5D8B|1|VC|G|1681
5D8B|1|VC|G|1682
*
5D8B|1|VC|U|1706
5D8B|1|VC|G|1707
*
5D8B|1|VC|C|1751
5D8B|1|VC|C|1752
5D8B|1|VC|G|1753
5D8B|1|VC|C|1754
5D8B|1|VC|A|1755
5D8B|1|VC|G|1756
5D8B|1|VC|U|1757
5D8B|1|VC|G|1758
5D8B|1|VC|A|1759
5D8B|1|VC|A|1760
5D8B|1|VC|C|1761
5D8B|1|VC|A|1762
5D8B|1|VC|G|1763
5D8B|1|VC|G|1764
*
5D8B|1|VC|C|1988
5D8B|1|VC|G|1989
5D8B|1|VC|C|1990

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain I

50S ribosomal protein L14

Chain N

50S ribosomal protein L19

Chain UC

Small subunit ribosomal RNA; SSU rRNA