J4_5DFE_015

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

5DFE|1|XA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5DFE_015 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0516

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5DFE|1|XA|G|115
5DFE|1|XA|A|116
5DFE|1|XA|G|117
5DFE|1|XA|U|118
5DFE|1|XA|A|119
5DFE|1|XA|A|120
5DFE|1|XA|C|121
5DFE|1|XA|G|122
*
5DFE|1|XA|U|239
5DFE|1|XA|C|240
*
5DFE|1|XA|G|286
5DFE|1|XA|U|287
5DFE|1|XA|A|288
5DFE|1|XA|G|289
*
5DFE|1|XA|C|311
5DFE|1|XA|C|312

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XQ

30S ribosomal protein S17