J4_5DGF_019
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5DGF_019 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1073
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
5DGF|1|5|C|2192
5DGF|1|5|U|2193
5DGF|1|5|G|2194
*
5DGF|1|5|C|2248
5DGF|1|5|G|2249
*
5DGF|1|5|C|2267
5DGF|1|5|U|2268
5DGF|1|5|U|2269
5DGF|1|5|A|2270
5DGF|1|5|A|2271
5DGF|1|5|G|2272
5DGF|1|5|G|2273
5DGF|1|5|U|2274
5DGF|1|5|A|2275
5DGF|1|5|G|2276
*
5DGF|1|5|U|2310
5DGF|1|5|G|2311
5DGF|1|5|A|2312
5DGF|1|5|A|2313
5DGF|1|5|U|2314
5DGF|1|5|G|2315
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 6
- Small subunit ribosomal RNA; SSU rRNA
- Chain f
- Eukaryotic translation initiation factor 5A-1
- Chain l2
- 60S ribosomal protein L2-A
- Chain q1
- 60S ribosomal protein L41-A
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