J4_5DGV_012
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 5DGV|1|5|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5DGV_012 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.0707
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5DGV|1|5|U|112
5DGV|1|5|C|113
*
5DGV|1|5|G|267
5DGV|1|5|A|268
5DGV|1|5|G|269
5DGV|1|5|U|270
5DGV|1|5|C|271
5DGV|1|5|G|272
*
5DGV|1|5|C|293
5DGV|1|5|U|294
5DGV|1|5|A|295
5DGV|1|5|A|296
5DGV|1|5|G|297
5DGV|1|5|U|298
5DGV|1|5|G|299
*
5DGV|1|5|U|316
5DGV|1|5|A|317
5DGV|1|5|A|318
5DGV|1|5|A|319
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m3
- 60S ribosomal protein L13-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain o5
- 60S ribosomal protein L35-A
- Chain o6
- 60S ribosomal protein L36-A
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