J4_5DM6_006

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUG*UU*GGGAG*CGAAGU

Length

16 nucleotides

Bulged bases

5DM6|1|X|U|1444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5DM6_006 not in the Motif Atlas

Homologous match to J4_7A0S_007

Geometric discrepancy: 0.1079

The information below is about J4_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_91813.1

Basepair signature

cWW-cWW-F-tSH-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

5DM6|1|X|A|1443
5DM6|1|X|U|1444
5DM6|1|X|G|1445
*
5DM6|1|X|U|1466
5DM6|1|X|U|1467
*
5DM6|1|X|G|1525
5DM6|1|X|G|1526
5DM6|1|X|G|1527
5DM6|1|X|A|1528
5DM6|1|X|G|1529
*
5DM6|1|X|C|1542
5DM6|1|X|G|1543
5DM6|1|X|A|1544
5DM6|1|X|A|1545
5DM6|1|X|G|1546
5DM6|1|X|U|1547

Current chains

Chain X

23S ribosomal RNA

Nearby chains