J4_5DM6_008

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUG*CGGC*GUCCUAAGGUAG*CGAAAG

Length

25 nucleotides

Bulged bases

5DM6|1|X|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DM6|1|X|C|1833
5DM6|1|X|U|1834
5DM6|1|X|G|1835
*
5DM6|1|X|C|1905
5DM6|1|X|G|1906
5DM6|1|X|G|1907
5DM6|1|X|C|1908
*
5DM6|1|X|G|1922
5DM6|1|X|U|1923
5DM6|1|X|C|1924
5DM6|1|X|C|1925
5DM6|1|X|U|1926
5DM6|1|X|A|1927
5DM6|1|X|A|1928
5DM6|1|X|G|1929
5DM6|1|X|G|1930
5DM6|1|X|U|1931
5DM6|1|X|A|1932
5DM6|1|X|G|1933
*
5DM6|1|X|C|1967
5DM6|1|X|G|1968
5DM6|1|X|A|1969
5DM6|1|X|A|1970
5DM6|1|X|A|1971
5DM6|1|X|G|1972

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2