J4_5DOX_001

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5DOX|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5DOX_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0509

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5DOX|1|1A|C|268
5DOX|1|1A|U|269
*
5DOX|1|1A|G|370
5DOX|1|1A|A|371
5DOX|1|1A|G|372
5DOX|1|1A|U|373
5DOX|1|1A|A|374
5DOX|1|1A|C|375
*
5DOX|1|1A|G|399
5DOX|1|1A|G|400
5DOX|1|1A|A|401
5DOX|1|1A|A|402
5DOX|1|1A|U|403
5DOX|1|1A|C|404
5DOX|1|1A|U|405
5DOX|1|1A|G|406
*
5DOX|1|1A|U|421
5DOX|1|1A|A|422
5DOX|1|1A|A|423
5DOX|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28