J4_5E6M_002

3D structure

PDB id

5E6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of human wild type GlyRS bound with tRNAGly

Experimental method

X-RAY DIFFRACTION

Resolution

2.93 Å

Loop

Sequence

CUGG*UG*CGACC*GG

Length

13 nucleotides

Bulged bases

5E6M|1|E|U|8, 5E6M|1|E|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5E6M_002 not in the Motif Atlas

Homologous match to J4_5E6M_001

Geometric discrepancy: 0.0639

The information below is about J4_5E6M_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_72305.5

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW

Number of instances in this motif group

6

Unit IDs

5E6M|1|E|C|7
5E6M|1|E|U|8
5E6M|1|E|G|9
5E6M|1|E|G|10
*
5E6M|1|E|U|25
5E6M|1|E|G|26
*
5E6M|1|E|C|44
5E6M|1|E|G|45
5E6M|1|E|A|46
5E6M|1|E|C|48
5E6M|1|E|C|49
*
5E6M|1|E|G|65
5E6M|1|E|G|66

Current chains

Chain E

tRNA(Gly)

Nearby chains

Chain A

Glycine--tRNA ligase

Chain B

Glycine--tRNA ligase