Motif J4_35610.2 Version J4_35610.2 of this group appears in releases 4.1 to 4.3

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5	break		6		7		8		9	break		10		11	1-11	3-4	3-7	5-6	9-10
1	J4_6CU1_001	6CU1	0.4600	3		A	Y RNA-like	G	52	A	54	G	55	*	C	69	G	70	*	U	15	U	16	G	17	G	20	*	U	36	C	37	cWW	cWW		cWW	cWW
2	J4_2D6F_002	2D6F	0.1932	2	tRNA junction	F	tRNA	G	907	G	909	G	910	*	U	925	G	926	*	C	944	G	945	A	947	A	949	*	U	965	C	966	cWW	ncWW	cHS	cWW	ncWW
3	J4_4QEI_001	4QEI	0.0000	2	tRNA junction	C	tRNA	C	7	G	9	G	10	*	U	25	G	26	*	C	44	G	45	A	46	C	49	*	G	65	G	66	cWW	cWW	cHS	cWW	cWW
4	J4_5E6M_001	5E6M	0.0779	2	tRNA junction	C	tRNA	C	7	G	9	G	10	*	U	25	G	26	*	C	44	G	45	A	46	C	49	*	G	65	G	66	cWW	cWW	cHS	cWW	cWW
5	J4_3AKZ_005	3AKZ	0.2208	2		E	tRNA	G	7	C	9	G	10	*	C	25	G	26	*	U	44	G	45	G	46	G	49	*	C	65	C	66	cWW	cWW	cHS	ncWW	cWW
6	J4_5WT1_001	5WT1	0.7769	2		C	tRNA	G	7	A	9	G	10	*	C	25	A	26	*	U	45	G	46	C	48	G	49	*	C	65	C	66	cWW	cWW		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUGGUGCGACC*GG	2
UUGUUGUCGUAG*CG	1
GUGGUGCGACA*UC	1
GUCGCGUGGUG*CC	1
GUAGCAUGUCG*CC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UG*GAC	3
UGUU*UA	1
UC*GGU	1
UA*GUC	1

Release history

Release	4.1	4.2	4.3
Date	2025-09-10	2025-10-08	2025-11-05
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tRNA junction (3)
(3)
Basepair signature: cWW-F-cWW-cWW-cHS-F-cWW
Heat map statistics: Min 0.08 | Avg 0.39 | Max 0.82

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Coloring options: Nucleotide numbers

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