Motif J4_35610.2 Version J4_35610.2 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | break | 6 | 7 | 8 | 9 | break | 10 | 11 | 1-11 | 3-4 | 3-7 | 5-6 | 9-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_6CU1_001 | 6CU1 | 0.4600 | 3 | A | Y RNA-like | G | 52 | A | 54 | G | 55 | * | C | 69 | G | 70 | * | U | 15 | U | 16 | G | 17 | G | 20 | * | U | 36 | C | 37 | cWW | cWW | cWW | cWW | ||
| 2 | J4_2D6F_002 | 2D6F | 0.1932 | 2 | tRNA junction | F | tRNA | G | 907 | G | 909 | G | 910 | * | U | 925 | G | 926 | * | C | 944 | G | 945 | A | 947 | A | 949 | * | U | 965 | C | 966 | cWW | ncWW | cHS | cWW | ncWW |
| 3 | J4_4QEI_001 | 4QEI | 0.0000 | 2 | tRNA junction | C | tRNA | C | 7 | G | 9 | G | 10 | * | U | 25 | G | 26 | * | C | 44 | G | 45 | A | 46 | C | 49 | * | G | 65 | G | 66 | cWW | cWW | cHS | cWW | cWW |
| 4 | J4_5E6M_001 | 5E6M | 0.0779 | 2 | tRNA junction | C | tRNA | C | 7 | G | 9 | G | 10 | * | U | 25 | G | 26 | * | C | 44 | G | 45 | A | 46 | C | 49 | * | G | 65 | G | 66 | cWW | cWW | cHS | cWW | cWW |
| 5 | J4_3AKZ_005 | 3AKZ | 0.2208 | 2 | E | tRNAGln | G | 7 | C | 9 | G | 10 | * | C | 25 | G | 26 | * | U | 44 | G | 45 | G | 46 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cHS | ncWW | cWW | |
| 6 | J4_5WT1_001 | 5WT1 | 0.7769 | 2 | C | tRNA | G | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | * | U | 45 | G | 46 | C | 48 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGG*UG*CGACC*GG | 2 |
| UUGUUG*UC*GUAG*CG | 1 |
| GUGG*UG*CGACA*UC | 1 |
| GUCG*CG*UGGUG*CC | 1 |
| GUAG*CA*UGUCG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UG**GAC* | 3 |
| UGUU**UA* | 1 |
| UC**GGU* | 1 |
| UA**GUC* | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA junction (3)
- (3)
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW
- Heat map statistics
- Min 0.08 | Avg 0.39 | Max 0.82
Coloring options: