3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAGUAACG*UC*GUAG*CC
Length
16 nucleotides
Bulged bases
5E7K|1|1G|C|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5E7K_014 not in the Motif Atlas
Homologous match to J4_4LFB_001
Geometric discrepancy: 0.0752
The information below is about J4_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

5E7K|1|1G|G|115
5E7K|1|1G|A|116
5E7K|1|1G|G|117
5E7K|1|1G|U|118
5E7K|1|1G|A|119
5E7K|1|1G|A|120
5E7K|1|1G|C|121
5E7K|1|1G|G|122
*
5E7K|1|1G|U|239
5E7K|1|1G|C|240
*
5E7K|1|1G|G|286
5E7K|1|1G|U|287
5E7K|1|1G|A|288
5E7K|1|1G|G|289
*
5E7K|1|1G|C|311
5E7K|1|1G|C|312

Current chains

Chain 1G
16S rRNA

Nearby chains

Chain 3A
30S ribosomal protein S12
Chain 7A
30S ribosomal protein S16
Chain 8A
30S ribosomal protein S17

Coloring options:


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