J4_5E7K_021

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

5E7K|1|1H|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5E7K_021 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.1031

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5E7K|1|1H|U|1313
5E7K|1|1H|C|1314
*
5E7K|1|1H|G|1338
5E7K|1|1H|G|1339
5E7K|1|1H|U|1340
5E7K|1|1H|U|1341
5E7K|1|1H|A|1342
5E7K|1|1H|G|1343
*
5E7K|1|1H|C|1404
5E7K|1|1H|U|1405
*
5E7K|1|1H|A|1597
5E7K|1|1H|C|1598
5E7K|1|1H|C|1599
5E7K|1|1H|C|1600
5E7K|1|1H|G|1601
5E7K|1|1H|U|1602
5E7K|1|1H|A|1603

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain F8

50S ribosomal protein L23