J4_5E81_017

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5E81|1|1H|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5E81_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0794

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5E81|1|1H|C|268
5E81|1|1H|U|269
*
5E81|1|1H|G|370
5E81|1|1H|A|371
5E81|1|1H|G|372
5E81|1|1H|U|373
5E81|1|1H|A|374
5E81|1|1H|C|375
*
5E81|1|1H|G|399
5E81|1|1H|G|400
5E81|1|1H|A|401
5E81|1|1H|A|402
5E81|1|1H|U|403
5E81|1|1H|C|404
5E81|1|1H|U|405
5E81|1|1H|G|406
*
5E81|1|1H|U|421
5E81|1|1H|A|422
5E81|1|1H|A|423
5E81|1|1H|G|424

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain J8

50S ribosomal protein L28