J4_5EL4_007

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

5EL4|1|14|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5EL4_007 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0925

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5EL4|1|14|G|1310
5EL4|1|14|G|1311
5EL4|1|14|U|1312
5EL4|1|14|U|1313
5EL4|1|14|C|1314
*
5EL4|1|14|G|1338
5EL4|1|14|G|1339
5EL4|1|14|U|1340
5EL4|1|14|U|1341
5EL4|1|14|A|1342
5EL4|1|14|G|1343
*
5EL4|1|14|C|1404
5EL4|1|14|U|1405
*
5EL4|1|14|A|1597
5EL4|1|14|C|1598
5EL4|1|14|C|1599
5EL4|1|14|C|1600
5EL4|1|14|G|1601
5EL4|1|14|U|1602
5EL4|1|14|A|1603
5EL4|1|14|C|1604

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain L5

50S ribosomal protein L34