3D structure

PDB id
5EL4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GAGUAACG*UC*GUAG*CC
Length
16 nucleotides
Bulged bases
5EL4|1|1G|C|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5EL4_014 not in the Motif Atlas
Homologous match to J4_4LFB_001
Geometric discrepancy: 0.0768
The information below is about J4_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

5EL4|1|1G|G|115
5EL4|1|1G|A|116
5EL4|1|1G|G|117
5EL4|1|1G|U|118
5EL4|1|1G|A|119
5EL4|1|1G|A|120
5EL4|1|1G|C|121
5EL4|1|1G|G|122
*
5EL4|1|1G|U|239
5EL4|1|1G|C|240
*
5EL4|1|1G|G|286
5EL4|1|1G|U|287
5EL4|1|1G|A|288
5EL4|1|1G|G|289
*
5EL4|1|1G|C|311
5EL4|1|1G|C|312

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 7A
30S ribosomal protein S16
Chain 8A
30S ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3836 s
Application loaded.