J4_5EL4_018

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5EL4|1|1H|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5EL4_018 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1371

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5EL4|1|1H|C|268
5EL4|1|1H|U|269
*
5EL4|1|1H|G|370
5EL4|1|1H|A|371
5EL4|1|1H|G|372
5EL4|1|1H|U|373
5EL4|1|1H|A|374
5EL4|1|1H|C|375
*
5EL4|1|1H|G|399
5EL4|1|1H|G|400
5EL4|1|1H|A|401
5EL4|1|1H|A|402
5EL4|1|1H|U|403
5EL4|1|1H|C|404
5EL4|1|1H|U|405
5EL4|1|1H|G|406
*
5EL4|1|1H|U|421
5EL4|1|1H|A|422
5EL4|1|1H|A|423
5EL4|1|1H|G|424

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 61

50S ribosomal protein L9

Chain J8

50S ribosomal protein L28