J4_5EL4_030

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UUAG*CAG*UUGGUCG*CA

Length

16 nucleotides

Bulged bases

5EL4|1|3L|U|8, 5EL4|1|3L|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.25

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

56

Unit IDs

5EL4|1|3L|U|7
5EL4|1|3L|U|8
5EL4|1|3L|A|9
5EL4|1|3L|G|10
*
5EL4|1|3L|C|25
5EL4|1|3L|A|26
5EL4|1|3L|G|27
*
5EL4|1|3L|U|43
5EL4|1|3L|U|44
5EL4|1|3L|G|45
5EL4|1|3L|G|46
5EL4|1|3L|U|47
5EL4|1|3L|C|48
5EL4|1|3L|G|49
*
5EL4|1|3L|C|65
5EL4|1|3L|A|66

Current chains

Chain 3L

tRNA-Lys

Nearby chains

Chain 2A

30S ribosomal protein S11

Chain 62

30S ribosomal protein S7