J4_70449.25

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	break		7		8		9		10		11	break		12		13	1-13	3-4	3-9	4-9	5-8	6-7	11-12
1	J4_5EL4_030	5EL4	0.5055	3	tRNA junction	3L	tRNA	U	7	A	9	G	10	*	C	25	A	26	G	27	*	U	43	U	44	G	45	G	46	G	49	*	C	65	A	66	cWW	cWW	cHS			ncWWa	cWW
2	J4_5E81_030	5E81	0.3189	3	tRNA junction	3L	tRNA	U	7	A	9	G	10	*	C	25	A	26	G	27	*	U	43	U	44	G	45	G	46	G	49	*	C	65	A	66	cWW	cWW				ncWW	cWW
3	J4_4MGN_001	4MGN	0.3420	3	tRNA junction	B	tRNA-glycine	G	7	A	9	G	10	*	C	24	A	25	C	26	*	G	42	G	43	G	44	G	45	G	48	*	U	64	C	65	cWW	cWW			cWW	cWW	cWW
4	J4_7UQ6_001	7UQ6	0.2635	3		B	tRNA	G	7	A	9	G	10	*	C	24	A	25	C	26	*	G	54	G	55	U	56	C	57	G	60	*	U	76	C	77	cWW	cWW			ncWW	cWW	cWW
5	J4_3AMU_002	3AMU	0.2938	3	tRNA junction	B	tRNA	G	7	A	9	G	10	*	C	25	G	26	C	27	*	G	43	C	44	G	45	G	46	G	49	*	C	65	C	66	ncWW	cWW	cHS			cWW	cWW
6	J4_4RDX_003	4RDX	0.2551	3	tRNA junction	C	tRNA	G	7	A	9	G	10	*	C	25	A	26	C	27	*	G	43	G	44	G	45	G	46	G	49	*	U	65	C	66	cWW	cWW	cHS		ncWW	ncWW	cWW
7	J4_1N78_001	1N78	0.3655	2	tRNA junction	C	tRNA(Glu)	A	507	C	509	G	510	*	C	525	G	526	C	527	*	G	543	A	544	A	545	A	546	G	549	*	C	565	U	566	cWW	cWW	cHS		cWW	cWW	cWW
8	J4_5HR7_002	5HR7	0.3782	2	tRNA junction	D	tRNA	U	7	C	9	G	10	*	C	25	A	26	C	27	*	G	43	U	44	A	45	A	46	A	48	*	U	64	A	65	cWW	cWW	cHS			cWW	cWW
9	J4_5HR6_001	5HR6	0.3594	2	tRNA junction	C	tRNA	U	6	C	8	G	9	*	C	25	A	26	C	27	*	G	43	U	44	A	45	A	46	A	48	*	U	64	A	65	cWW	cWW	cHS			cWW	cWW
10	J4_2DER_002	2DER	0.2642	2	tRNA junction	D	tRNA	U	7	C	9	G	10	*	C	25	A	26	C	27	*	G	43	U	44	A	45	A	46	A	49	*	U	65	A	66	cWW	cWW	ncHS			cWW	ncWW
11	J4_1VTQ_001	1VTQ	0.3386	2		A	T-RNA-ASP	A	7	A	9	G	10	*	U	25	G	26	G	27	*	C	43	A	44	G	45	A	46	5MC	48	*	G	64	U	65	cWW	cWW	cHS	ncBW	cWW	cWW	cWW
12	J4_1IL2_001	1IL2	0.3140	2	tRNA junction	C	tRNA	A	907	A	909	G	910	*	U	925	G	926	G	927	*	C	943	A	944	G	945	A	946	5MC	949	*	G	965	U	966	cWW	cWW	cHS		cWW	cWW	cWW
13	J4_1J1U_001	1J1U	0.2529	3	tRNA junction	B	tRNA(Tyr)	G	507	A	509	G	510	*	C	526	G	527	G	528	*	C	544	A	545	U	546	G	547	G	550	*	C	566	C	567	cWW	cWW			cWW	cWW	cWW
14	J4_1QU2_001	1QU2	0.1609	3	tRNA junction	T	tRNA	G	7	A	9	G	10	*	C	25	G	26	C	27	*	G	43	A	44	G	45	G	46	G	49	*	U	65	C	66	cWW	cWW			cWW	cWW	cWW
15	J4_1FFY_001	1FFY	0.1609	3		T	ISOLEUCYL-TRNA	G	7	A	9	G	10	*	C	25	G	26	C	27	*	G	43	A	44	G	45	G	46	G	49	*	U	65	C	66	cWW	cWW			cWW	cWW	cWW
16	J4_7E8O_002	7E8O	0.2478	3		X	tRNA	A	7	A	9	G	10	*	C	24	C	25	C	26	*	G	42	U	43	U	44	G	45	G	48	*	U	64	U	65	cWW	cWW			ncWW	ncWW	cWW
17	J4_4WJ4_001	4WJ4	0.1920	3	tRNA junction	B	tRNA	A	7	A	9	G	10	*	C	25	A	26	A	27	*	U	43	G	44	G	45	G	46	C	49	*	G	65	U	66	cWW	cWW	cHS		ncWW	cWW	cWW
18	J4_2FMT_002	2FMT	0.2410	3		D	FORMYL-METHIONYL-TRNAFMET2	G	7	G	9	G	10	*	C	25	G	26	U	27	*	A	43	A	44	G	45	A	46	G	49	*	C	65	C	66	cWW	cWW	cHS		cWW	cWW	cWW
19	J4_6CFJ_015	6CFJ	0.2086	3		1x	tRNA	G	7	G	9	G	10	*	C	25	G	26	U	27	*	A	43	A	44	G	45	G	46	G	49	*	C	65	C	66	cWW	cWW	cHS		cWW	cWW	cWW
20	J4_9DFC_015	9DFC	0.2166	3		1x	tRNA	G	7	G	9	G	10	*	C	25	G	26	U	27	*	A	43	A	44	G	45	G	46	G	49	*	C	65	C	66	cWW	cWW	cHS		cWW	cWW	cWW
21	J4_5E81_027	5E81	0.2128	3	tRNA junction	2K	tRNA	G	7	G	9	G	10	*	C	26	G	27	U	28	*	A	44	A	45	G	46	G7M	47	G	50	*	C	66	C	67	cWW	cWW	cHS		ncWW	cWW	cWW
22	J4_4V9Q_031	4V9Q	0.1983	3	tRNA junction	DV	tRNA	G	7	G	9	G	10	*	C	25	G	26	U	27	*	A	43	A	44	G	45	G	46	G	49	*	C	65	C	66	cWW	cWW	cHS		cWW	cWW	cWW
23	J4_4WT8_034	4WT8	0.2384	3	tRNA junction	D4	tRNA	G	7	G	9	G	10	*	C	26	G	27	U	28	*	A	44	A	45	G	46	G	47	G	50	*	C	66	C	67	ncWW	ncWW	cHS		cWW	cWW	ncWW
24	J4_4TUE_004	4TUE	0.2784	3	tRNA junction	QV	tRNA	G	6	G	8	G	9	*	C	25	G	26	U	27	*	A	43	A	44	G	45	G	46	G	49	*	C	65	C	66	cWW	cWW	cHS		cWW	cWW	cWW
25	J4_7VNV_001	7VNV	0.2025	3		A	tRNA	G	7	C	9	2MG	10	*	C	25	M2G	26	C	27	*	G	43	A	44	G	45	G	46	5MC	49	*	G	65	C	66	cWW	cWW	cHS		cWW	cWW	cWW
26	J4_1GAX_004	1GAX	0.1565	3	tRNA junction	D	TRNA(VAL)	C	907	A	909	G	910	*	C	924	G	925	C	926	*	G	942	A	943	G	944	G	945	G	948	*	C	964	G	965	ncWW	cWW	cHS		cWW	cWW	cWW
27	J4_8S95_001	8S95	0.1786	3		C	Lysine tRNA scaffold,Poliovirus cloverleaf RNA	A	7	A	9	G	10	*	C	25	A	26	G	27	*	C	123	G	124	G	125	G	126	C	129	*	G	145	U	146	cWW	cWW			ncWW	cWW	cWW
28	J4_8VU0_001	8VU0	0.0000	3		C	tRNA	G	7	A	9	G	10	*	C	26	G	27	C	28	*	G	43	A	44	G	45	G	46	G	49	*	U	65	C	66	cWW	cWW	cHS		cWW	cWW	cWW
29	J4_3WQY_001	3WQY	0.1248	3	tRNA junction	C	tRNA	G	1607	A	1609	G	1610	*	C	1625	G	1626	C	1627	*	G	1643	A	1644	G	1645	G	1646	G	1649	*	C	1665	C	1666	cWW	cWW	cHS		cWW	cWW	cWW
30	J4_6UGG_002	6UGG	0.1254	3		B	tRNA	G	6	A	8	G	9	*	U	25	A	26	C	27	*	G	43	G	44	G	45	G	46	G	49	*	U	65	C	66	cWW	cWW	cHS		cWW	cWW	cWW
31	J4_5AXM_001	5AXM	0.1417	3	tRNA junction	P	tRNA	U	7	A	9	G	10	*	C	25	G	26	C	27	*	G	43	A	44	G	45	G	46	C	49	*	G	65	A	66	cWW	cWW	cHS		cWW	cWW	cWW
32	J4_7EQJ_002	7EQJ	0.1498	3		B	tRNA	U	7	A	9	G	10	*	C	25	A	26	C	27	*	G	43	G	44	G	45	G	46	G	49	*	C	65	A	66	cWW	cWW	cHS		cWW	cWW	cWW
33	J4_7MRL_001	7MRL	0.1590	3		A	tRNA	A	7	A	9	G	10	*	C	25	A	26	U	27	*	A	46	G	47	G	48	G	49	C	52	*	G	68	U	69	cWW	cWW	cHS		cWW	cWW	cWW
34	J4_6UFM_001	6UFM	0.1365	3		A	tRNA	A	7	A	9	G	10	*	C	26	G	27	C	28	*	G	44	A	45	G	46	G	47	G	50	*	C	66	U	67	cWW	cWW	cHS		cWW	cWW	cWW
35	J4_7K98_001	7K98	0.1966	3		C	tRNA	G	7	A	9	G	10	*	C	26	G	27	U	28	*	A	44	A	45	G	46	G	47	G	50	*	C	66	C	67	cWW	cWW	cHS		cWW	cWW	cWW
36	J4_8UO6_001	8UO6	0.1559	3		A	HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold	A	7	A	9	G	10	*	C	25	A	26	G	27	*	C	101	G	102	G	103	G	104	C	107	*	G	123	U	124	cWW	cWW	cHS		cWW	cWW	cWW
37	J4_8UO6_002	8UO6	0.1764	3		B	HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold	A	7	A	9	G	10	*	C	25	A	26	G	27	*	C	101	G	102	G	103	G	104	C	107	*	G	123	U	124	cWW	cWW	cHS		ncWW	cWW	cWW
38	J4_8SP9_001	8SP9	0.1700	3		C	tRNA scaffold,CVB3 Cloverleaf RNA	A	7	A	9	G	10	*	C	25	A	26	G	27	*	C	120	G	121	G	122	G	123	C	126	*	G	142	U	143	cWW	cWW	cHS			cWW	cWW
39	J4_7YSE_001	7YSE	0.2038	3		E	tRNA	A	7	A	9	G	10	*	C	25	A	26	C	27	*	G	43	G	44	G	45	G	46	G	49	*	U	65	U	66	cWW	cWW	cHS		cWW	cWW	cWW
40	J4_6JXM_001	6JXM	0.1344	3		B	tRNA	G	7	A	9	G	10	*	C	24	A	25	C	26	*	G	64	G	65	G	66	G	67	G	70	*	U	86	C	87	cWW	cWW	cHS		ncWW	cWW	cWW
41	J4_3TUP_001	3TUP	0.2121	3	tRNA junction	T	tRNA	G	7	A	9	G	10	*	C	25	A	26	U	27	*	A	43	G	44	U	45	G	46	G	49	*	U	65	C	66	cWW	cWW			ncWW	cWW	ncWW
42	J4_7UZ0_001	7UZ0	0.1783	3		A	tRNA	G	7	A	9	G	10	*	C	24	A	25	C	26	*	G	58	G	59	G	60	G	61	G	64	*	U	80	C	81	cWW	cWW	ncHS		ncWW	ncWW	cWW
43	J4_6GSL_033	6GSL	0.2264	3		3L	tRNA	G	7	A	9	G	10	*	U	26	A	27	C	28	*	G	44	C	45	G	46	G	47	G	50	*	C	66	C	67	ncWW	ncWW	cHS			ncWW	cWW
44	J4_3KFU_002	3KFU	0.2506	3	tRNA junction	L	tRNA	G	7	A	9	G	10	*	C	25	A	26	G	27	*	U	43	A	44	G	45	G	46	G	49	*	C	65	C	66	cWW	cWW	cHS		ncWw	cWW	cWW
45	J4_1H4S_001	1H4S	0.2487	3	tRNA junction	T	tRNA	G	7	A	9	G	10	*	C	25	A	26	C	27	*	G	43	G	44	G	45	G	46	G	49	*	U	65	C	66	cWW	cWW	cHS		ncWW	cWW	cWW
46	J4_2ZUE_001	2ZUE	0.2525	3	tRNA junction	B	tRNA-Arg	G	907	A	909	G	910	*	C	925	G	926	G	927	*	C	943	A	944	G	945	G	946	C	949	*	G	965	C	966	cWW	cWW	ncHS		cWW	cWW	cWW
47	J4_2AZX_002	2AZX	0.2428	3	tRNA junction	D	72-MER	G	507	G	509	G	510	*	C	525	G	526	U	527	*	A	543	A	544	G	545	G	546	G	549	*	U	565	C	566	cWW	cWW	cHS		cWW	cWW	cWW
48	J4_6NWY_004	6NWY	0.2877	3	tRNA junction (H)	QV	tRNA	U	7	G	9	G	10	*	C	25	A	26	C	27	*	G	43	G	44	G	45	G	46	G	49	*	U	65	A	66	cWW	cWW	cHS		ncWW	cWW	cWW
49	J4_4V9K_004	4V9K	0.2562	3	tRNA junction	AW	tRNA	G	7	A	9	G	10	*	C	25	A	26	C	27	*	G	43	G	44	G	45	G	46	A	49	*	U	65	C	66	cWW	cWW	cHS		cWW	cWW	ncWW
50	J4_7LYF_001	7LYF	0.3163	3		A	tRNA	A	7	A	9	G	10	*	C	25	A	26	G	27	*	C	106	G	107	G	108	G	109	C	112	*	G	128	U	129	cWW	ncWW				cWW	cWW
51	J4_4WT8_031	4WT8	0.2677	3	tRNA junction (H)	C3	tRNA	A	7	A	9	G	10	*	C	25	A	26	G	27	*	C	43	G	44	U	45	G	46	C	49	*	G	65	U	66	ncWW	cWW			ncWW	ncWW	cWW
52	J4_3EPH_001	3EPH	0.3877	3	tRNA junction	E	tRNA	A	7	G	9	G	10	*	C	25	A	26	G	27	*	U	43	U	44	G	45	G	46	C	49	*	G	65	U	66	cWW	cWW				ncWW	cWW
53	J4_1F7U_001	1F7U	0.3676	3	tRNA junction	B	TRNA(ARG)	G	907	1MG	909	2MG	910	*	C	925	M2G	926	PSU	927	*	A	943	A	944	G	945	A	946	5MC	949	*	G	965	C	966	cWW	cWW	cHS			cWW	cWW
54	J4_1FIR_001	1FIR	0.2548	3	tRNA junction	A	tRNA	A	7	A	9	2MG	10	*	C	25	A	26	PSU	27	*	A	43	G	44	G	45	7MG	46	5MC	49	*	G	65	U	66	cWW	cWW	cHS		cWW	cWW	cWW
55	J4_3FOZ_002	3FOZ	0.4314	3		D	tRNA(Phe)	A	7	A	9	G	10	*	C	25	A	26	G	27	*	C	43	G	44	U	45	G	46	C	49	*	G	65	U	66	cWW	cWW				cWW	cWW
56	J4_5CCB_001	5CCB	0.6236	3	tRNA junction	N	tRNA	A	7	A	9	G	10	*	C	25	A	26	U	27	*	A	43	G	44	G	45	G	46	C	49	*	G	65	U	66	cWW	cWW	ncHS		cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUAGCAGCGGGUCC*GU	5
GUAGCACGGGGUCG*UC	4
UUCGCACGUAACA*UA	3
GUAGCGCGAGGUCG*UC	3
GUGGCGUAAGGUCG*CC	3
UUAGCAGUUGGUCG*CA	2
AUAGUGGCAGAU5MC*GU	2
G(4SU)GGCGUAAGGUCG*CC	2
AUAGCAUAGGGUCC*GU	2
AUAGCAGCGUGUCC*GU	2
GUAGCACGGUCGCG*UC	1
GUAGCGCGCGGUCG*CC	1
AUCGCGCGAAACG*CU	1
GUAGCGGCAUGUCG*CC	1
AUAGCCCGUUGUCG*UU	1
AUAGCAAUGGGUCC*GU	1
G(4SU)GGCGUAAGAUCG*CC	1
G(4SU)GGCGUAAG(G7M)UCG*CC	1
G(4SU)C2MGC(M2G)CGAGG(9QV)(5MC)5MC*GC	1
CUAGCGCGAGGUCG*CG	1
GUAGCGCGAGGCCG*CC	1
GUAGUACGGGGUCG*UC	1
UUAGCGCGAGGUCC*GA	1
UUAGCACGGGGUCG*CA	1
AUAGCGCGAGGUCG*CU	1
GUAGCGUAAGGUCG*CC	1
AUAGCACGGGGUCG*UU	1
GUAGCAUAGUGUCG*UC	1
GUAGUACGCGGUCG*CC	1
GUAGCAGUAGGUCG*CC	1
GUAGCACGGGGGCG*UC	1
GUAGCGGCAGGUCC*GC	1
GUGGCGUAAGGUUG*UC	1
UUGGCACGGGGUCG*UA	1
GUAGCACGGGGUCA*UC	1
AUGGCAGUUGGUCC*GU	1
GU(1MG)2MGC(M2G)PSUAAGA(H2U)U5MC*GC	1
AUA2MGCAPSUAGG(7MG)(H2U)(5MC)5MC*GU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAAGGGUC*	16
UAGAGGUC*	8
UCAUAAC*	3
UGGAGGUC*	3
UAAGUGUC*	3
UAAUGGUC*	2
UAGAGAU*	2
(4SU)GGAGGUC*	2
UAAGUCGC*	1
UAGCGGUC*	1
UCGAAAC*	1
UAGAUGUC*	1
UACUUGUC*	1
(4SU)GGAGAUC*	1
(4SU)GGAG(G7M)UC*	1
(4SU)C(M2G)AGG(9QV)(5MC)*	1
UAGAGGCC*	1
UAACGGUC*	1
UAAAGGUC*	1
UAAGGGGC*	1
UGGAGGUU*	1
UGAGGGUC*	1
UGAUGGUC*	1
U(1MG)(M2G)AGA(H2U)U*	1
UAAGG(7MG)(H2U)(5MC)*	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Sequence	Counts
AUAGCAGCGGGUCC*GU	5
GUAGCACGGGGUCG*UC	4
UUCGCACGUAACA*UA	3
GUAGCGCGAGGUCG*UC	3
GUGGCGUAAGGUCG*CC	3
UUAGCAGUUGGUCG*CA	2
AUAGUGGCAGAU5MC*GU	2
G(4SU)GGCGUAAGGUCG*CC	2
AUAGCAUAGGGUCC*GU	2
AUAGCAGCGUGUCC*GU	2
GUAGCACGGUCGCG*UC	1
GUAGCGCGCGGUCG*CC	1
AUCGCGCGAAACG*CU	1
GUAGCGGCAUGUCG*CC	1
AUAGCCCGUUGUCG*UU	1
AUAGCAAUGGGUCC*GU	1
G(4SU)GGCGUAAGAUCG*CC	1
G(4SU)GGCGUAAG(G7M)UCG*CC	1
G(4SU)C2MGC(M2G)CGAGG(9QV)(5MC)5MC*GC	1
CUAGCGCGAGGUCG*CG	1
GUAGCGCGAGGCCG*CC	1
GUAGUACGGGGUCG*UC	1
UUAGCGCGAGGUCC*GA	1
UUAGCACGGGGUCG*CA	1
AUAGCGCGAGGUCG*CU	1
GUAGCGUAAGGUCG*CC	1
AUAGCACGGGGUCG*UU	1
GUAGCAUAGUGUCG*UC	1
GUAGUACGCGGUCG*CC	1
GUAGCAGUAGGUCG*CC	1
GUAGCACGGGGGCG*UC	1
GUAGCGGCAGGUCC*GC	1
GUGGCGUAAGGUUG*UC	1
UUGGCACGGGGUCG*UA	1
GUAGCACGGGGUCA*UC	1
AUGGCAGUUGGUCC*GU	1
GU(1MG)2MGC(M2G)PSUAAGA(H2U)U5MC*GC	1
AUA2MGCAPSUAGG(7MG)(H2U)(5MC)5MC*GU	1

Sequence	Counts
UAAGGGUC*	16
UAGAGGUC*	8
UCAUAAC*	3
UGGAGGUC*	3
UAAGUGUC*	3
UAAUGGUC*	2
UAGAGAU*	2
(4SU)GGAGGUC*	2
UAAGUCGC*	1
UAGCGGUC*	1
UCGAAAC*	1
UAGAUGUC*	1
UACUUGUC*	1
(4SU)GGAGAUC*	1
(4SU)GGAG(G7M)UC*	1
(4SU)C(M2G)AGG(9QV)(5MC)*	1
UAGAGGCC*	1
UAACGGUC*	1
UAAAGGUC*	1
UAAGGGGC*	1
UGGAGGUU*	1
UGAGGGUC*	1
UGAUGGUC*	1
U(1MG)(M2G)AGA(H2U)U*	1
UAAGG(7MG)(H2U)(5MC)*	1

Motif J4_70449.25 Version J4_70449.25 of this group appears in releases 3.91 to 3.94 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif J4_70449.25 Version J4_70449.25 of this group appears in releases 3.91 to 3.94

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Csv

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