J4_5EL6_017

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5EL6|1|1H|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5EL6_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0896

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

5EL6|1|1H|C|268
5EL6|1|1H|U|269
*
5EL6|1|1H|G|370
5EL6|1|1H|A|371
5EL6|1|1H|G|372
5EL6|1|1H|U|373
5EL6|1|1H|A|374
5EL6|1|1H|C|375
*
5EL6|1|1H|G|399
5EL6|1|1H|G|400
5EL6|1|1H|A|401
5EL6|1|1H|A|402
5EL6|1|1H|U|403
5EL6|1|1H|C|404
5EL6|1|1H|U|405
5EL6|1|1H|G|406
*
5EL6|1|1H|U|421
5EL6|1|1H|A|422
5EL6|1|1H|A|423
5EL6|1|1H|G|424

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain J8

50S ribosomal protein L28