J4_5EL7_014

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

5EL7|1|1G|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5EL7_014 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0794

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5EL7|1|1G|G|115
5EL7|1|1G|A|116
5EL7|1|1G|G|117
5EL7|1|1G|U|118
5EL7|1|1G|A|119
5EL7|1|1G|A|120
5EL7|1|1G|C|121
5EL7|1|1G|G|122
*
5EL7|1|1G|U|239
5EL7|1|1G|C|240
*
5EL7|1|1G|G|286
5EL7|1|1G|U|287
5EL7|1|1G|A|288
5EL7|1|1G|G|289
*
5EL7|1|1G|C|311
5EL7|1|1G|C|312

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 7A

30S ribosomal protein S16

Chain 8A

30S ribosomal protein S17