J4_5EL7_026

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5EL7_026 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0842

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5EL7|1|1H|G|2643
5EL7|1|1H|G|2644
5EL7|1|1H|G|2645
5EL7|1|1H|C|2646
*
5EL7|1|1H|G|2674
5EL7|1|1H|A|2675
5EL7|1|1H|C|2676
*
5EL7|1|1H|G|2731
5EL7|1|1H|G|2732
5EL7|1|1H|A|2733
5EL7|1|1H|A|2734
5EL7|1|1H|G|2735
*
5EL7|1|1H|C|2769
5EL7|1|1H|G|2770
5EL7|1|1H|C|2771

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 58

50S ribosomal protein L13

Chain 68

50S ribosomal protein L14