J4_5FDV_010
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*CGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5FDV_010 not in the Motif Atlas
- Homologous match to J4_9DFE_010
- Geometric discrepancy: 0.0623
- The information below is about J4_9DFE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5FDV|1|1A|G|2655
5FDV|1|1A|G|2656
5FDV|1|1A|G|2657
5FDV|1|1A|C|2658
*
5FDV|1|1A|G|2686
5FDV|1|1A|A|2687
5FDV|1|1A|C|2688
*
5FDV|1|1A|G|2744
5FDV|1|1A|G|2745
5FDV|1|1A|A|2746
5FDV|1|1A|A|2747
5FDV|1|1A|G|2748
*
5FDV|1|1A|C|2782
5FDV|1|1A|G|2783
5FDV|1|1A|C|2784
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
- Chain 1O
- 50S ribosomal protein L14
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