J4_5FDV_014
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CU*GAGUAC*GGAAUCUG*UAAG
- Length
- 20 nucleotides
- Bulged bases
- 5FDV|1|2A|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5FDV_014 not in the Motif Atlas
- Homologous match to J4_9DFE_001
- Geometric discrepancy: 0.0572
- The information below is about J4_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5FDV|1|2A|C|268
5FDV|1|2A|U|269
*
5FDV|1|2A|G|370
5FDV|1|2A|A|371
5FDV|1|2A|G|372
5FDV|1|2A|U|373
5FDV|1|2A|A|374
5FDV|1|2A|C|375
*
5FDV|1|2A|G|399
5FDV|1|2A|G|400
5FDV|1|2A|A|401
5FDV|1|2A|A|402
5FDV|1|2A|U|403
5FDV|1|2A|C|404
5FDV|1|2A|U|405
5FDV|1|2A|G|406
*
5FDV|1|2A|U|421
5FDV|1|2A|A|422
5FDV|1|2A|A|423
5FDV|1|2A|G|424
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 21
- 50S ribosomal protein L28
- Chain 2I
- 50S ribosomal protein L9
Coloring options: