J4_5GAD_001

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5GAD|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAD_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0977

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5GAD|1|A|C|268
5GAD|1|A|C|269
*
5GAD|1|A|G|370
5GAD|1|A|A|371
5GAD|1|A|G|372
5GAD|1|A|U|373
5GAD|1|A|A|374
5GAD|1|A|G|375
*
5GAD|1|A|U|399
5GAD|1|A|G|400
5GAD|1|A|A|401
5GAD|1|A|A|402
5GAD|1|A|U|403
5GAD|1|A|A|404
5GAD|1|A|U|405
5GAD|1|A|G|406
*
5GAD|1|A|C|421
5GAD|1|A|A|422
5GAD|1|A|A|423
5GAD|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28