J4_5GAE_009

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5GAE|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAE_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1382

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5GAE|1|A|C|1833
5GAE|1|A|U|1834
5GAE|1|A|G|1835
*
5GAE|1|A|C|1905
5GAE|1|A|G|1906
*
5GAE|1|A|C|1924
5GAE|1|A|C|1925
5GAE|1|A|U|1926
5GAE|1|A|A|1927
5GAE|1|A|A|1928
5GAE|1|A|G|1929
5GAE|1|A|G|1930
5GAE|1|A|U|1931
5GAE|1|A|A|1932
5GAE|1|A|G|1933
*
5GAE|1|A|C|1967
5GAE|1|A|G|1968
5GAE|1|A|A|1969
5GAE|1|A|A|1970
5GAE|1|A|U|1971
5GAE|1|A|G|1972

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2