J4_5GAF_001

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5GAF|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAF_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0977

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5GAF|1|A|C|268
5GAF|1|A|C|269
*
5GAF|1|A|G|370
5GAF|1|A|A|371
5GAF|1|A|G|372
5GAF|1|A|U|373
5GAF|1|A|A|374
5GAF|1|A|G|375
*
5GAF|1|A|U|399
5GAF|1|A|G|400
5GAF|1|A|A|401
5GAF|1|A|A|402
5GAF|1|A|U|403
5GAF|1|A|A|404
5GAF|1|A|U|405
5GAF|1|A|G|406
*
5GAF|1|A|C|421
5GAF|1|A|A|422
5GAF|1|A|A|423
5GAF|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28