J4_5GAF_006

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

5GAF|1|A|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAF_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0745

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5GAF|1|A|U|1313
5GAF|1|A|C|1314
*
5GAF|1|A|G|1338
5GAF|1|A|G|1339
5GAF|1|A|U|1340
5GAF|1|A|G|1341
5GAF|1|A|A|1342
5GAF|1|A|G|1343
*
5GAF|1|A|C|1404
5GAF|1|A|U|1405
*
5GAF|1|A|A|1597
5GAF|1|A|A|1598
5GAF|1|A|U|1599
5GAF|1|A|C|1600
5GAF|1|A|G|1601
5GAF|1|A|U|1602
5GAF|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L23