J4_5GAF_011
3D structure
- PDB id
- 5GAF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC in complex with SRP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5GAF_011 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.0811
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5GAF|1|A|G|2643
5GAF|1|A|G|2644
5GAF|1|A|G|2645
5GAF|1|A|C|2646
*
5GAF|1|A|G|2674
5GAF|1|A|A|2675
5GAF|1|A|C|2676
*
5GAF|1|A|G|2731
5GAF|1|A|G|2732
5GAF|1|A|A|2733
5GAF|1|A|A|2734
5GAF|1|A|G|2735
*
5GAF|1|A|U|2769
5GAF|1|A|G|2770
5GAF|1|A|C|2771
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L13
- Chain L
- 50S ribosomal protein L14
Coloring options: