J4_5GAG_004

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

5GAG|1|A|G|1271, 5GAG|1|A|A|1272, 5GAG|1|A|U|1273, 5GAG|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAG_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0889

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5GAG|1|A|C|1270
5GAG|1|A|G|1271
5GAG|1|A|A|1272
5GAG|1|A|U|1273
5GAG|1|A|A|1274
5GAG|1|A|A|1275
5GAG|1|A|A|1276
*
5GAG|1|A|U|1294
5GAG|1|A|C|1295
*
5GAG|1|A|G|1645
5GAG|1|A|C|1646
5GAG|1|A|U|1647
5GAG|1|A|U|1648
*
5GAG|1|A|A|2009
5GAG|1|A|G|2010

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32