J4_5GAK_001
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- UC*GAGUCGA*UCUAAGUG*UAAA
- Length
- 21 nucleotides
- Bulged bases
- 5GAK|1|1|U|298
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5GAK|1|1|U|112
5GAK|1|1|C|113
*
5GAK|1|1|G|267
5GAK|1|1|A|268
5GAK|1|1|G|269
5GAK|1|1|U|270
5GAK|1|1|C|271
5GAK|1|1|G|272
5GAK|1|1|A|273
*
5GAK|1|1|U|292
5GAK|1|1|C|293
5GAK|1|1|U|294
5GAK|1|1|A|295
5GAK|1|1|A|296
5GAK|1|1|G|297
5GAK|1|1|U|298
5GAK|1|1|G|299
*
5GAK|1|1|U|316
5GAK|1|1|A|317
5GAK|1|1|A|318
5GAK|1|1|A|319
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L13-A
- Chain P
- 60S ribosomal protein L15-A
- Chain j
- 60S ribosomal protein L35-A
- Chain k
- 60S ribosomal protein L36-A
Coloring options: