J4_5GAK_002
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CUAUGUU*ACGUC*GAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 5GAK|1|1|U|190
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5GAK|1|1|C|185
5GAK|1|1|U|186
5GAK|1|1|A|187
5GAK|1|1|U|188
5GAK|1|1|G|189
5GAK|1|1|U|190
5GAK|1|1|U|191
*
5GAK|1|1|A|204
5GAK|1|1|C|205
5GAK|1|1|G|206
5GAK|1|1|U|207
5GAK|1|1|C|208
*
5GAK|1|1|G|212
5GAK|1|1|A|213
5GAK|1|1|G|214
*
5GAK|1|1|C|226
5GAK|1|1|G|227
5GAK|1|1|U|228
5GAK|1|1|G|229
5GAK|1|1|U|230
5GAK|1|1|G|231
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L4-A
- Chain a
- 60S ribosomal protein L26-A
Coloring options: