J4_5GAK_005

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GG*CU*AGG*CUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAK|1|1|G|1674
5GAK|1|1|G|1675
*
5GAK|1|1|C|1693
5GAK|1|1|U|1694
*
5GAK|1|1|A|1752
5GAK|1|1|G|1753
5GAK|1|1|G|1754
*
5GAK|1|1|C|1771
5GAK|1|1|U|1772
5GAK|1|1|C|1773

Current chains

Chain 1

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L19-A

Chain W

60S ribosomal protein L22-A

Chain i

60S ribosomal protein L34-A

Chain m

60S ribosomal protein L38