J4_5GAK_010

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GUUAG*CA*UGGUCGC*GCAC

Length

18 nucleotides

Bulged bases

5GAK|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAK|1|A|G|6
5GAK|1|A|U|7
5GAK|1|A|U|8
5GAK|1|A|A|9
5GAK|1|A|G|10
*
5GAK|1|A|C|25
5GAK|1|A|A|26
*
5GAK|1|A|U|44
5GAK|1|A|G|45
5GAK|1|A|G|46
5GAK|1|A|U|47
5GAK|1|A|C|48
5GAK|1|A|G|49
5GAK|1|A|C|50
*
5GAK|1|A|G|64
5GAK|1|A|C|65
5GAK|1|A|A|66
5GAK|1|A|C|67

Current chains

Chain A

The A-site tRNA was modeled based on an E. coli tRNA-Lys

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain B

Transfer RNA; tRNA

Chain s

60S ribosomal protein L10