J4_5GAK_015
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CUAAGG*CUUGAU*ACC*GUG
- Length
- 18 nucleotides
- Bulged bases
- 5GAK|1|1|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5GAK|1|1|C|2654
5GAK|1|1|U|2655
5GAK|1|1|A|2656
5GAK|1|1|A|2657
5GAK|1|1|G|2658
5GAK|1|1|G|2659
*
5GAK|1|1|C|2711
5GAK|1|1|U|2712
5GAK|1|1|U|2713
5GAK|1|1|G|2714
5GAK|1|1|A|2715
5GAK|1|1|U|2716
*
5GAK|1|1|A|2740
5GAK|1|1|C|2741
5GAK|1|1|C|2742
*
5GAK|1|1|G|2751
5GAK|1|1|U|2752
5GAK|1|1|G|2753
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L42-A
- Chain H
- 60S ribosomal protein L5
- Chain V
- 60S ribosomal protein L21-A
- Chain d
- 60S ribosomal protein L29
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